3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13704

Details:

PFam ID : PF13704

PFam Domain Description : Glycosyl transferase family 2

Number of Sequence in 50% Dataset : 157

Number of Sequence in Full Dataset : 479

Average sequence length: 101.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13704	F0YJY2_9STRA_303_447	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13704	B1Z8Q2_METPB_18_128	98.1

Sequence based PCA Plot of the family - PF13704 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=29 Length=8
Motif2 Start=7 Length=18
Motif3 Start=86 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay