3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13701

Details:

PFam ID : PF13701

PFam Domain Description : Transposase DDE domain group 1

Number of Sequence in 50% Dataset : 129

Number of Sequence in Full Dataset : 277

Average sequence length: 252.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13701	A6FUY4_9RHOB_2_93	71.0

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13701	B0C907_ACAM1_1_49	100

Sequence based PCA Plot of the family - PF13701 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=130 Length=8
Motif4 Start=82 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay