3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13700

Details:

PFam ID : PF13700

PFam Domain Description : Domain of unknown function (DUF4158)

Number of Sequence in 50% Dataset : 151

Number of Sequence in Full Dataset : 404

Average sequence length: 146.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13700	Q4MV73_BACCE_6_45	46.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13700	B9J6A2_BACCQ_10_77	100

Sequence based PCA Plot of the family - PF13700 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=11
Motif2 Start=56 Length=11
Motif3 Start=15 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay