3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13698

Details:

PFam ID : PF13698

PFam Domain Description : Domain of unknown function (DUF4156)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 100

Average sequence length: 90.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13698	A8QYS6_9GAMM_20_124	20

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13698	B8CUJ4_SHEPW_18_124	100

Sequence based PCA Plot of the family - PF13698 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=59 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay