3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13696

Details:

PFam ID : PF13696

PFam Domain Description : Zinc knuckle

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 76

Average sequence length: 30.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13696	F1S6H9_PIG_624_650	90

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13696	F2U789_9EUKA_126_157	100

Sequence based PCA Plot of the family - PF13696 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=11 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay