3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13695

Details:

PFam ID : PF13695

PFam Domain Description : Zinc-binding domain

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 110

Average sequence length: 94.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13695	A9JTP5_XENTR_47_159	92.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13695	E7LH64_TRYCR_24_106	99.0

Sequence based PCA Plot of the family - PF13695 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=18
Motif2 Start=1 Length=8
Motif3 Start=40 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay