3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13692

Details:

PFam ID : PF13692

PFam Domain Description : Glycosyl transferases group 1

Number of Sequence in 50% Dataset : 1183

Number of Sequence in Full Dataset : 2423

Average sequence length: 141.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13692	E1QUE1_VULDI_226_370	72.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13692	A1WKR7_VEREI_141_269	99.7

Sequence based PCA Plot of the family - PF13692 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=21 Length=8
Motif2 Start=12 Length=8
Motif3 Start=37 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay