3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13691

Details:

PFam ID : PF13691

PFam Domain Description : Family description

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 120

Average sequence length: 62.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13691	B6JX69_SCHJY_16_93	40.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13691	C1FGY4_MICSR_12_76	100

Sequence based PCA Plot of the family - PF13691 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=29 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay