3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13690

Details:

PFam ID : PF13690

PFam Domain Description : Chemotaxis phosphatase CheX

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 404

Average sequence length: 97.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13690	D0Z0F2_LISDA_1_53	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13690	D6SK17_9DELT_49_167	100

Sequence based PCA Plot of the family - PF13690 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=27
Motif2 Start=48 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay