3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13689

Details:

PFam ID : PF13689

PFam Domain Description : Domain of unknown function (DUF4154)

Number of Sequence in 50% Dataset : 115

Number of Sequence in Full Dataset : 190

Average sequence length: 140.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13689	B9PF76_POPTR_201_294	87.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13689	B9XIB5_9BACT_32_190	100

Sequence based PCA Plot of the family - PF13689 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=106 Length=8
Motif2 Start=151 Length=8
Motif3 Start=13 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay