3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13688

Details:

PFam ID : PF13688

PFam Domain Description : Metallo-peptidase family M84

Number of Sequence in 50% Dataset : 88

Number of Sequence in Full Dataset : 182

Average sequence length: 196.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13688	A9V3Z6_MONBE_293_400	91.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13688	A9V303_MONBE_228_488	100

Sequence based PCA Plot of the family - PF13688 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=18
Motif2 Start=34 Length=11
Motif3 Start=134 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay