3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13686

Details:

PFam ID : PF13686

PFam Domain Description : DsrE/DsrF/DrsH-like family

Number of Sequence in 50% Dataset : 49

Number of Sequence in Full Dataset : 302

Average sequence length: 144.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13686	E6QDN8_9ZZZZ_39_128	18.7

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13686	D0LX13_HALO1_398_559	100

Sequence based PCA Plot of the family - PF13686 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay