3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13685

Details:

PFam ID : PF13685

PFam Domain Description : Iron-containing alcohol dehydrogenase

Number of Sequence in 50% Dataset : 55

Number of Sequence in Full Dataset : 261

Average sequence length: 251.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13685	Q93FT5_EHRRU_29_184	94.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13685	E4M5A2_9FIRM_17_294	100

Sequence based PCA Plot of the family - PF13685 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=74 Length=8
Motif2 Start=98 Length=8
Motif3 Start=158 Length=8
Motif4 Start=222 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay