3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13684

Details:

PFam ID : PF13684

PFam Domain Description : Dihydroxyacetone kinase family

Number of Sequence in 50% Dataset : 108

Number of Sequence in Full Dataset : 478

Average sequence length: 283.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13684	A7C623_9GAMM_9_59	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13684	E3DQT9_HALPG_236_580	100

Sequence based PCA Plot of the family - PF13684 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=180 Length=8
Motif2 Start=333 Length=8
Motif3 Start=49 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay