3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13683

Details:

PFam ID : PF13683

PFam Domain Description : Integrase core domain

Number of Sequence in 50% Dataset : 96

Number of Sequence in Full Dataset : 1187

Average sequence length: 61.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13683	A7C623_9GAMM_9_59	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13683	E4K3N5_9FIRM_5_75	99.8

Sequence based PCA Plot of the family - PF13683 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=23
Motif2 Start=51 Length=20

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay