3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13682

Details:

PFam ID : PF13682

PFam Domain Description : MCP-signal associated domain

Number of Sequence in 50% Dataset : 221

Number of Sequence in Full Dataset : 466

Average sequence length: 71.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13682	A7C623_9GAMM_9_59	96.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13682	E1QLF3_DESB2_151_237	100

Sequence based PCA Plot of the family - PF13682 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=59 Length=8
Motif4 Start=23 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay