3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13681

Details:

PFam ID : PF13681

PFam Domain Description : Type IV pilus assembly protein PilX C-term

Number of Sequence in 50% Dataset : 18

Number of Sequence in Full Dataset : 32

Average sequence length: 93.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13681	Q0K7V6_CUPNH_78_167	70.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13681	Q0K7V6_CUPNH_78_167	80

Sequence based PCA Plot of the family - PF13681 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=19 Length=8
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8
Motif4 Start=77 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay