3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13679

Details:

PFam ID : PF13679

PFam Domain Description : Methyltransferase domain

Number of Sequence in 50% Dataset : 135

Number of Sequence in Full Dataset : 526

Average sequence length: 151.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13679	D2U1C8_9ENTR_66_331	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13679	E3S094_PYRTT_143_419	100

Sequence based PCA Plot of the family - PF13679 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=30 Length=8
Motif3 Start=182 Length=8
Motif4 Start=210 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay