3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13677

Details:

PFam ID : PF13677

PFam Domain Description : Membrane MotB of proton-channel complex MotA/MotB

Number of Sequence in 50% Dataset : 27

Number of Sequence in Full Dataset : 811

Average sequence length: 57.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13677	D0L1D7_HALNC_42_99	61.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13677	E4TXT6_SULKY_1_63	99.5

Sequence based PCA Plot of the family - PF13677 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=1 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay