3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13676

Details:

PFam ID : PF13676

PFam Domain Description : TIR domain

Number of Sequence in 50% Dataset : 557

Number of Sequence in Full Dataset : 1169

Average sequence length: 108.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13676	D1RNH9_SEROD_190_264	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13676	F2UQV6_9EUKA_32_128	100

Sequence based PCA Plot of the family - PF13676 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=11 Length=8
Motif2 Start=85 Length=8
Motif3 Start=111 Length=8
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay