3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13675

Details:

PFam ID : PF13675

PFam Domain Description : Type IV pili methyl-accepting chemotaxis transducer N-term

Number of Sequence in 50% Dataset : 224

Number of Sequence in Full Dataset : 548

Average sequence length: 115.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13675	D1RNH9_SEROD_190_264	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13675	D5C0R1_NITHN_35_151	99.6

Sequence based PCA Plot of the family - PF13675 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=68 Length=8
Motif3 Start=19 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay