3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13671

Details:

PFam ID : PF13671

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 435

Number of Sequence in Full Dataset : 1713

Average sequence length: 137.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13671	C2QNK3_BACCE_6_43	92.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13671	B4RID3_PHEZH_1_67	99.9

Sequence based PCA Plot of the family - PF13671 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=23 Length=8
Motif2 Start=5 Length=17
Motif3 Start=70 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay