3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13668

Details:

PFam ID : PF13668

PFam Domain Description : Ferrochelatase

Number of Sequence in 50% Dataset : 82

Number of Sequence in Full Dataset : 338

Average sequence length: 141.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13668	D0N4T0_PHYIT_11_163	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13668	Q5BGU2_EMENI_617_753	100

Sequence based PCA Plot of the family - PF13668 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay