3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13667

Details:

PFam ID : PF13667

PFam Domain Description : ThiC-associated domain

Number of Sequence in 50% Dataset : 7

Number of Sequence in Full Dataset : 528

Average sequence length: 76.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13667	D0N4T0_PHYIT_11_163	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13667	B0TY69_FRAP2_20_98	100

Sequence based PCA Plot of the family - PF13667 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=67 Length=11
Motif2 Start=3 Length=8
Motif3 Start=18 Length=8
Motif4 Start=44 Length=11

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay