3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13666

Details:

PFam ID : PF13666

PFam Domain Description : Domain of unknown function (DUF4151)

Number of Sequence in 50% Dataset : 23

Number of Sequence in Full Dataset : 103

Average sequence length: 119.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13666	D0N4T0_PHYIT_11_163	68.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13666	B6JYP1_SCHJY_57_189	87

Sequence based PCA Plot of the family - PF13666 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=33 Length=18
Motif3 Start=17 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay