3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13665

Details:

PFam ID : PF13665

PFam Domain Description : Domain of unknown function (DUF4150)

Number of Sequence in 50% Dataset : 31

Number of Sequence in Full Dataset : 149

Average sequence length: 106.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13665	B9JZW1_AGRVS_18_77	76.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13665	A9FMX1_SORC5_32_106	100

Sequence based PCA Plot of the family - PF13665 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=59 Length=8
Motif2 Start=104 Length=8
Motif3 Start=20 Length=8
Motif4 Start=8 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay