3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13663

Details:

PFam ID : PF13663

PFam Domain Description : Domain of unknown function (DUF4148)

Number of Sequence in 50% Dataset : 47

Number of Sequence in Full Dataset : 558

Average sequence length: 61.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13663	B2JNU4_BURP8_8_72	8.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13663	B2JNU4_BURP8_8_72	99.1

Sequence based PCA Plot of the family - PF13663 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=25 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay