3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13662

Details:

PFam ID : PF13662

PFam Domain Description : Toprim domain

Number of Sequence in 50% Dataset : 112

Number of Sequence in Full Dataset : 2363

Average sequence length: 84.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13662	B5SFC3_RALSO_1_59	55.8

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13662	A8JHD3_CHLRE_194_303	76

Sequence based PCA Plot of the family - PF13662 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=20
Motif2 Start=56 Length=17

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay