3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13661

Details:

PFam ID : PF13661

PFam Domain Description : 2OG-Fe(II) oxygenase superfamily

Number of Sequence in 50% Dataset : 44

Number of Sequence in Full Dataset : 105

Average sequence length: 69.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13661	Y3707_ACAM1_59_136	51.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13661	F0YGN5_9STRA_673_745	85

Sequence based PCA Plot of the family - PF13661 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=18
Motif2 Start=10 Length=8
Motif3 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay