3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13660

Details:

PFam ID : PF13660

PFam Domain Description : Domain of unknown function (DUF4147)

Number of Sequence in 50% Dataset : 97

Number of Sequence in Full Dataset : 436

Average sequence length: 223.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13660	B9TF67_RICCO_175_317	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13660	B7G663_PHATC_127_408	100

Sequence based PCA Plot of the family - PF13660 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=9 Length=8
Motif2 Start=194 Length=27
Motif3 Start=132 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay