3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13658

Details:

PFam ID : PF13658

PFam Domain Description : Ubiquitin C-terminal hydrolase 37 receptor binding site

Number of Sequence in 50% Dataset : 56

Number of Sequence in Full Dataset : 186

Average sequence length: 101.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13658	F2CT76_HORVD_272_348	74.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13658	C1MQF6_MICPC_279_372	98.9

Sequence based PCA Plot of the family - PF13658 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=24 Length=8
Motif4 Start=44 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay