3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13657

Details:

PFam ID : PF13657

PFam Domain Description : HipA N-terminal domain

Number of Sequence in 50% Dataset : 169

Number of Sequence in Full Dataset : 718

Average sequence length: 103.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13657	F1L850_ASCSU_26_70	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13657	C4ZB48_EUBR3_7_84	100

Sequence based PCA Plot of the family - PF13657 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=118 Length=8
Motif3 Start=32 Length=8
Motif4 Start=76 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay