3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13654

Details:

PFam ID : PF13654

PFam Domain Description : AAA domain

Number of Sequence in 50% Dataset : 130

Number of Sequence in Full Dataset : 485

Average sequence length: 362.3

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13654	A5ZJ68_9BACE_228_257	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13654	A7HR30_PARL1_25_575	100

Sequence based PCA Plot of the family - PF13654 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=30 Length=8
Motif2 Start=389 Length=8
Motif3 Start=362 Length=17
Motif4 Start=63 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay