3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13653

Details:

PFam ID : PF13653

PFam Domain Description : Glycerophosphoryl diester phosphodiesterase family

Number of Sequence in 50% Dataset : 11

Number of Sequence in Full Dataset : 104

Average sequence length: 31.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13653	A5ZJ68_9BACE_228_257	40

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13653	D4IK80_9BACT_207_236	99.0

Sequence based PCA Plot of the family - PF13653 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=1 Length=8
Motif2 Start=22 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay