3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13650

Details:

PFam ID : PF13650

PFam Domain Description : Aspartyl protease

Number of Sequence in 50% Dataset : 511

Number of Sequence in Full Dataset : 1139

Average sequence length: 91.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13650	C5PFE4_COCP7_60_160	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13650	B3DVX9_METI4_169_271	99.4

Sequence based PCA Plot of the family - PF13650 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=34 Length=8
Motif3 Start=128 Length=8
Motif4 Start=46 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay