3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13648

Details:

PFam ID : PF13648

PFam Domain Description : Lipocalin-like domain

Number of Sequence in 50% Dataset : 237

Number of Sequence in Full Dataset : 293

Average sequence length: 114.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13648	A5F9Z8_FLAJ1_13_143	95.3

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13648	D7VJ38_9SPHI_15_148	92.1

Sequence based PCA Plot of the family - PF13648 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=28 Length=8
Motif2 Start=19 Length=8
Motif3 Start=10 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay