3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13646

Details:

PFam ID : PF13646

PFam Domain Description : HEAT repeats

Number of Sequence in 50% Dataset : 2075

Number of Sequence in Full Dataset : 5707

Average sequence length: 87.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13646	C6B781_RHILS_487_572	96.4

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13646	D9W4L4_9ACTO_89_196	99.6

Sequence based PCA Plot of the family - PF13646 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=49 Length=8
Motif3 Start=107 Length=8
Motif4 Start=140 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay