3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13645

Details:

PFam ID : PF13645

PFam Domain Description : L,D-transpeptidase catalytic domain

Number of Sequence in 50% Dataset : 17

Number of Sequence in Full Dataset : 154

Average sequence length: 170.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13645	E1WY18_BACMS_70_201	62.5

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13645	E1WYG4_BACMS_31_208	100

Sequence based PCA Plot of the family - PF13645 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=5 Length=14
Motif2 Start=27 Length=8
Motif3 Start=44 Length=11
Motif4 Start=60 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay