3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13644

Details:

PFam ID : PF13644

PFam Domain Description : DKNYY family

Number of Sequence in 50% Dataset : 224

Number of Sequence in Full Dataset : 440

Average sequence length: 114.4

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13644	E6RJK1_PSEU9_5_96	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13644	D4BDE2_9ENTR_204_391	99.7

Sequence based PCA Plot of the family - PF13644 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=61 Length=8
Motif4 Start=106 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay