3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13642

Details:

PFam ID : PF13642

PFam Domain Description : protein structure with unknown function

Number of Sequence in 50% Dataset : 20

Number of Sequence in Full Dataset : 39

Average sequence length: 97.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13642	E6RJK1_PSEU9_5_96	100

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13642	Q12JW9_SHEDO_8_125	100

Sequence based PCA Plot of the family - PF13642 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 1 motifs

Motif1 Start=6 Length=36

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay