3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13641

Details:

PFam ID : PF13641

PFam Domain Description : Glycosyltransferase like family 2

Number of Sequence in 50% Dataset : 958

Number of Sequence in Full Dataset : 3424

Average sequence length: 233.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13641	Q39VJ3_GEOMG_64_248	90.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13641	E7NDM6_9ACTO_4_145	99.6

Sequence based PCA Plot of the family - PF13641 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=15 Length=8
Motif2 Start=6 Length=8
Motif3 Start=224 Length=8
Motif4 Start=251 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay