3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13636

Details:

PFam ID : PF13636

PFam Domain Description : pre-rRNA processing and ribosome biogenesis

Number of Sequence in 50% Dataset : 61

Number of Sequence in Full Dataset : 344

Average sequence length: 103.8

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13636	A6G700_9DELT_20_132	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13636	C2KWL4_9FIRM_339_482	100

Sequence based PCA Plot of the family - PF13636 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=49 Length=8
Motif3 Start=23 Length=8
Motif4 Start=62 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay