3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13635

Details:

PFam ID : PF13635

PFam Domain Description : Domain of unknown function (DUF4143)

Number of Sequence in 50% Dataset : 315

Number of Sequence in Full Dataset : 1230

Average sequence length: 196.2

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13635	A6G700_9DELT_20_132	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13635	D4BND3_BIFBR_3_83	99.9

Sequence based PCA Plot of the family - PF13635 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=1 Length=8
Motif2 Start=48 Length=8
Motif3 Start=18 Length=8
Motif4 Start=59 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay