3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13634

Details:

PFam ID : PF13634

PFam Domain Description : Nucleoporin FG repeat region

Number of Sequence in 50% Dataset : 118

Number of Sequence in Full Dataset : 794

Average sequence length: 102.5

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13634	A6G700_9DELT_20_132	23.9

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13634	F2QNV3_PICPA_565_806	97.3

Sequence based PCA Plot of the family - PF13634 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 2 motifs

Motif1 Start=10 Length=27
Motif2 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay