3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13632

Details:

PFam ID : PF13632

PFam Domain Description : Glycosyl transferase family group 2

Number of Sequence in 50% Dataset : 153

Number of Sequence in Full Dataset : 594

Average sequence length: 211.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13632	Q9X3L9_9PROC_1_32	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13632	B9LGD9_CHLSY_135_281	95.7

Sequence based PCA Plot of the family - PF13632 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=19 Length=8
Motif2 Start=1 Length=17
Motif3 Start=139 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay