3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13628

Details:

PFam ID : PF13628

PFam Domain Description : Domain of unknown function (DUF4142)

Number of Sequence in 50% Dataset : 150

Number of Sequence in Full Dataset : 364

Average sequence length: 133.1

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13628	C6RPQ4_ACIRA_18_82	85.2

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13628	Q098C1_STIAD_65_229	100

Sequence based PCA Plot of the family - PF13628 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=10 Length=8
Motif2 Start=1 Length=8
Motif3 Start=37 Length=8
Motif4 Start=90 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay