3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13625

Details:

PFam ID : PF13625

PFam Domain Description : Helicase conserved C-terminal domain

Number of Sequence in 50% Dataset : 54

Number of Sequence in Full Dataset : 365

Average sequence length: 128.0

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13625	C0ZBU9_BREBN_348_474	39.6

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13625	Q4JX86_CORJK_567_697	100

Sequence based PCA Plot of the family - PF13625 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=20 Length=8
Motif2 Start=11 Length=8
Motif3 Start=41 Length=11
Motif4 Start=2 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay