3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13622

Details:

PFam ID : PF13622

PFam Domain Description : Thioesterase-like superfamily

Number of Sequence in 50% Dataset : 277

Number of Sequence in Full Dataset : 1082

Average sequence length: 247.6

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13622	B8LD49_THAPS_287_339	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13622	Q2KFY5_MAGO7_36_250	100

Sequence based PCA Plot of the family - PF13622 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 3 motifs

Motif1 Start=1 Length=8
Motif2 Start=60 Length=8
Motif3 Start=12 Length=18

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay