3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13621

Details:

PFam ID : PF13621

PFam Domain Description : Cupin-like domain

Number of Sequence in 50% Dataset : 481

Number of Sequence in Full Dataset : 1161

Average sequence length: 243.7

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13621	B8LD49_THAPS_287_339	No suitable BRS could be identified

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13621	C5LVX3_9ALVE_244_387	99.9

Sequence based PCA Plot of the family - PF13621 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=206 Length=11
Motif2 Start=24 Length=8
Motif3 Start=12 Length=8
Motif4 Start=273 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay