3PFDB+ - Database of Best Representative Profiles of Protein Families : Database Entry - PF13620

Details:

PFam ID : PF13620

PFam Domain Description : Carboxypeptidase regulatory-like domain

Number of Sequence in 50% Dataset : 2001

Number of Sequence in Full Dataset : 3446

Average sequence length: 80.9

Pairwise Identity of Sequence in 50% Dataset : 31.3

FASSM Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13620	B8LD49_THAPS_287_339	98.1

HMMER Based Coverage Results:

Pfam ID	Best Profile	Coverage of Best Profile
PF13620	E3FVQ3_STIAD_290_350	99.9

Sequence based PCA Plot of the family - PF13620 :

BRP of Green color is by FASSM and of Red color is by HMMER

PSIMOT-Motifs Extracted using PSIMOT:
There are 4 motifs

Motif1 Start=14 Length=8
Motif2 Start=45 Length=8
Motif3 Start=33 Length=8
Motif4 Start=1 Length=8

Download PSSM/HMM Models/Alignment:

Prof. R. Sowdhamini (Contact : mini@ncbs.res.in)
Agnel P. Joseph, Prashant N. Shingate, and Atul K. Upadhyay